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#1: Bioinformatics

10/22/11

Permalink 04:05:00 pm , Categories: Uncategorized

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Visualising a prokaryote genome as a circular image has become a powerful means of displaying informative comparisons of one genome to a number of others. A new visualisation and abstraction method was required in order to improve the validation, interpretation and communication of genome sequence information;

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Permalink 04:03:00 pm , Categories: Uncategorized

CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing.

Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use,

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10/21/11

Permalink 05:09:00 pm , Categories: Uncategorized

Characterization of mitogen activated protein kinases (MAPKs) in the Curcuma longa expressed sequence tag database.

Protein phosphorylation/dephosphorylation through protein kinases is a key regulatory mechanism in modulating the activation of intracellular responses to extracellular information. The mitogen-activated protein kinase (MAPK) cascades are known to be one of the

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Permalink 05:07:00 pm , Categories: Uncategorized

Molecular modeling and identification of substrate binding site of orphan human cytochrome P450 4F22.

Cytochromes P450 (CYP) which are a superfamily of heme containing enzymes play an important role in detoxification and metabolic activation and which generally monooxygenate hydrophobic compounds. The human cytochrome P450 4F22 (CYP4F22) was categorized

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Permalink 05:02:00 pm , Categories: Uncategorized

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

A new user-friendly software package named RNA-Seq by Expectation Maximization (RSEM), which works on RNA-seq data has been developed under Department of Computer Sciences, University of Wisconsin-Madison by Bo Li and Colin N Dewey. RNA-Seq is a powerful technology for

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#2: Cancer Biology

Permalink New Oncolytic Virus Shows Improved Effectiveness in Preclinical Testing

A new fourth-generation oncolytic virus designed to both kill cancer cells and inhibit blood-vessel growth has shown greater effectiveness than earlier versions when tested in animal models of human brain cancer.

#3: Developmental Biology

Permalink Plasticity of photoreceptor-generating retinal progenitors revealed by prolonged retinoic acid exposure.

Retinoic acid (RA) is important for vertebrate eye morphogenesis and is a regulator of photoreceptor development in the retina. The vertebrate retina forms from a neuroepithelium that develops into a complex, layered structure of neurons consisting of

#3: Clinical Research

Permalink Researchers Design A Viral Vector To Treat A Genetic Form Of Blindness

Researchers at Ohio State University Medical Center and Nationwide Children's Hospital have developed a viral vector designed to deliver a gene into the eyes of people born with an inherited, progressive form of blindness that affects mainly males.

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