Category: Uncategorized
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
Visualising a prokaryote genome as a circular image has become a powerful means of displaying informative comparisons of one genome to a number of others. A new visualisation and abstraction method was required in order to improve the validation, interp… more »
CloVR: A virtual machine for automated and portable sequence analysis from the desktop using cloud computing.
Next-generation sequencing technologies have decentralized sequence acquisition, increasing the demand for new bioinformatics tools that are easy to use, portable across multiple platforms, and scalable for high-throughput applications. Cloud computing… more »
Characterization of mitogen activated protein kinases (MAPKs) in the Curcuma longa expressed sequence tag database.
Protein phosphorylation/dephosphorylation through protein kinases is a key regulatory mechanism in modulating the activation of intracellular responses to extracellular information. The mitogen-activated protein kinase (MAPK) cascades are known to be on… more »
Molecular modeling and identification of substrate binding site of orphan human cytochrome P450 4F22.
Cytochromes P450 (CYP) which are a superfamily of heme containing enzymes play an important role in detoxification and metabolic activation and which generally monooxygenate hydrophobic compounds. The human cytochrome P450 4F22 (CYP4F22) was categorized… more »
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
A new user-friendly software package named RNA-Seq by Expectation Maximization (RSEM), which works on RNA-seq data has been developed under Department of Computer Sciences, University of Wisconsin-Madison by Bo Li and Colin N Dewey. RNA-Seq is a powerfu… more »
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